From DNA sequences to a plethora of bacterial taxonomies, Paul Cormican (ESR10 Advisor) at Teagasc steered me in the right direction. Using high-throughput amplicon sequencing data, I was taught how to implement a pipeline (DADA2) to infer exact amplicon sequence variants (ASVs) and investigate microbiomeThe diverse consortium of bacteria, archaea, fungi, protozoa, viruses, and their collective genome f… profiles.
I learned a lot from my sessions with Paul and now feel prepared to work with microbiomeThe diverse consortium of bacteria, archaea, fungi, protozoa, viruses, and their collective genome f… data and to identify the most appropriate tools for interpreting it. Furthermore, I had very fruitful discussions with my co-advisor Peadar Lawlor (ESR9 advisor) and Gillian Gardiner from the Waterford Institute of Technology (ESR9 and ESR10 co-advisor).